scRNA-Seq Data Upload & Pre-Processing


Preprocessing options:

Upload 10x data file (Three files: matrix.mtx, barcodes.tsv and genes.tsv files are expected):




Upload raw data file (One file: .csv file with genes as rows and cells as columns is expected):





Download .scDat File.

Upload local scRNA-Seq data file:





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Data QC Features:

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Download new .scDat

Clustering scRNA-Seq data:



Download Labels

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Differential Expression Analysis:



Download DE Analysis

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Gene Enrichment Analysis:




Download Genes

Download GE Analysis

Genes Group View:




Download cells (.csv)

Download gene list
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Genes Pair View:



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Violin/Bar Plots:

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Heatmap ft. top Genes


Download Gene List

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Cell Cycle Analysis:



Download CC Order

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Analysis Documents:


Documents (.pdf) are generated based on current analysis status.


Generate PDF Docs